Publications

Naoki MASUDA, Norio KONNO and Kazuyuki AIHARA, "Transmission of severe acute respiratory syndrome in dynamical small-world networks," Physical Review E, Vol. 69, 031917-1-6, 2004
Naoki MASUDA and Kazuyuki AIHARA, "Global and Local Synchrony of Coupled Neurons in Small-world Networks," Biological Cybernetics, Vol. 90, pp. 302-309, 2004
Yoshihiro MORISHITA and Kazuyuki AIHARA, "Noise-Reduction through Interaction in Gene Expression and Biochemical Reaction Processes," Journal of Theoretical Biology, Vol. 228, pp. 315-325, 2004
Kazuyuki Aihara, Ichiro Tsuda, and Hiroshi Fujii: "Prologue - The Work of the Late Professor Gen Matsumoto," Journal of Integrative Neuroscience, Vol.3, No.2, pp.111-113 , 2004.
Hiroshi FUJII, Kazuyuki AIHARA and Ichiro TSUDA, "Functional Relevance of `Excitatory' GABA Actions in Cortical Interneurons: A Dynamical Systems Approach," Journal of Integrative Neuroscience, Vol. 3, No. 2, pp. 183-205, 2004
Luonan CHEN, Ruiqi WANG, Tetsuya J. KOBAYASHI and Kazuyuki AIHARA, "Dynamics of Gene Regulatory Networks with Cell Division Cycle," Physical Review E, Vol. 70, 011909-1-12, 2004
Ryota TOMIOKA, Hidenori KIMURA, Tetsuya J. KOBAYASHI and Kazuyuki AIHARA, "Multivariate Analysis of Noise in Genetic Regulatory Networks," Journal of Theoretical Biology, Vol. 229, pp. 501-521, 2004
Naoki MASUDA and Norio KONNO, "Subcritical behavior in the alternating supercritical Domany-Kinzel dynamics," The European Physical Journal B, Vol. 40, No. 3, pp. 313-319, 2004
Hiroaki TANAKA and Kazuyuki AIHARA, "Analysis of the Hodgkin-Huxley Equations with Noise: the Effects of Noise on Chaotic Neurodynamics," Artificial Life and Robotics, Vol. 8, pp. 190-196, 2004
Tsuyoshi OKAMOTO, Masataka WATANABE, Kazuyuki AIHARA and Shunsuke KONDO, "An Explanation of Contextual Modulation by Short-range Isotropic Connections and Orientation Map Geometry in the Primary Visual Cortex," Biological Cybernetics, Vol. 91, No. 6, pp. 396-407, 2004
Tianshou Zhou, Luonan Chen, Ruiqi Wang, and Kazuyuki Aihara, "Intercellular Communications Induced by Random Fluctuations," Genome Informatics, Vol.15, No.2, pp.223-233 , 2004
Gouhei TANAKA, Miguel A.F. Sanjuán and Kazuyuki AIHARA, "Crisis-induced intermittency in two coupled chaotic maps: Towards understanding chaotic itinerancy," Physical Review E, Vol. 71, 016219-1-11, 2005
Yoshihiko HORIO, Takuya TANIGUCHI and Kazuyuki AIHARA, "An Asynchronous Spiking Chaotic Neuron Integrated Circuit," Neurocomputing, Vol. 64, pp. 447-472, 2005
Gouhei Tanaka and Kazuyuki Aihara, "Multistate Associative Memory with Parametrically Coupled Map Networks," International Journal of Bifurcation and Chaos, Vol. 15, No. 4, pp. 1395-1410, 2005
Taro Toyoizumi, Jean-Pascal Pfister, Kazuyuki Aihara, and Wulfram Gerstner, "Generalized Bienenstock-Cooper-Munro Rule for Spiking Neurons that Maximizes Information Transmission," Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, pp. 5239-5244, 2005
Takashi Kohno and Kazuyuki Aihara, "A MOSFET-based model of a Class 2 Nerve membrane," IEEE Transactions on Neural Networks, Vol. 16, No. 3, pp. 754-773, 2005
Luonan Chen, Ruiqi Wang, Tianshou Zhou, and Kazuyuki Aihara, "Noise-induced Cooperative Behavior in a Multicell System," Bioinformatics, Vol.21, No.11, pp.2722-2729 , 2005.
Kosuke Hamaguchi, Masato Okada, Shigeru Kubota, and Kazuyuki Aihara, "Stochastic Resonance of Localized Activity Driven by Common Noise," Biological Cybernetics, Vol. 92, No. 6, pp. 438-444, 2005
Kenji Morita and Kazuyuki Aihara, "A Network Model with Pyramidal Cells and GABAergic Non-FS Cells in the Cerebral Cortex," Neurocomputing, Vol. 65-66, pp. 697-707, 2005
Yoshihiko HORIO, Tohru IKEGUCHI and Kazuyuki AIHARA, "A Mixed Analog/Digital Chaotic Neuro-Computer System for Quadratic Assignment Problems," Neural Networks, Vol. 18, No. 5-6, pp. 505-513, 2005
Hideyuki Suzuki, Shunji Ito, and Kazuyuki Aihara, "Double Rotations," Discrete and Continuous Dynamical Systems, Vol. 13, pp. 515-532, 2005
Yoshihiro Morishita, Tetsuya Kobayashi, and Kazuyuki Aihara, "Evaluation of the Performance of Mechanisms for Noise Attenuation in a Single-gene Expression," Journal of Theoretical Biology, Vol. 235, pp. 241-264, 2005
Kosuke Hamaguchi, Masato Okada, Michiko Yamana, and Kazuyuki Aihara, "Correlated Firing in a Feedforward Network with Mexican-Hat-Type Connectivity," Neural Computation, Vol. 17, No .9, pp. 2034-2059, 2005
Naoki Masuda, Brent Doiron, Andre Longtin and Kazuyuki Aihara., "Coding of temporally varying signals in networks of spiking neurons with global delayed feedback," Neural Computation, Vol. 17, No. 10, pp. 2139-2175, 2005
T.Zhou, L.Chen, K.Aihara, "Molecular Communication through Stochastic Synchronization Induced by Extracellular Fluctuations," Physical Review Letters, Vol. 95, 178103, 2005
Yoshito Hirata, Kevin Judd, and Kazuyuki Aihara, "Characterizing Chaotic Response of a Squid Axon through Generating Partitions," Physics Letters A, Vol. 346, pp. 141-147, 2005
Kunichika Tsumoto, Tetsuya Yoshinaga and Hiroshi Kawakami, "Bifurcation of synchronization phenomena observed in a coupled neuron model for circadian clock rhythms," Systems and Computers in Japan, Vol. 36, No. 8, pp. 1-14, 2005
Shigeru Kubota and Kazuyuki Aihara, "Analyzing Global Dynamics of a Neural Field Model," Neural Processing Letters, Vol. 21, pp. 133-141, 2005
Tadayoshi Fushiki, Fumiyasu Komaki, and Kazuyuki Aihara, "Nonparametric Bootstrap Prediction," Bernoulli, Vol. 11, No. 2, pp. 293-307, 2005
Kenji Morita, Kunichika Tsumoto, and Kazuyuki Aihara, "Possible Effects of Depolarizing GABAA Conductance on the Neuronal Input-output Relationship: A Modeling Study," Journal of Neurophysiology, Vol.93, pp.3504-3523 , 2005
Kunichika TSUMOTO, Hiroyuki KITAJIMA, Tetsuya YOSHINAGA, Kazuyuki AIHARA and Hiroshi KAWAKAMI, "Bifurcations in Morris-Lecar Neuron Model," Neurocomputing, Vol. 69, No. 4-6, pp. 293-316, 2006
Munehisa SEKIKAWA, Naohiro INABA, Tetsuya YOSHINAGA and Takashi TSUBOUCHI, "Bifurcation structure of successive torus doubling," Physics Letters A, Vol. 348, 2006
Naoki Masuda, "Simultaneous rate-synchrony codes in population of spiking neurons," Neural Computation, Vol. 18, No. 1, pp. 45-59, 2006
Chunguang Li, Luonan Chen and Kazuyuki Aihara, "Synchronization of coupled nonidentical genetic oscillators," Physical Biology, Vol. 3, pp. 37-44, 2006
Kunichika Tsumoto, Tetsuya Yoshinaga, Hitoshi Iida, Hiroshi Kawakami and Kazuyuki Aihara, "Bifurcations in a mathematical model for circadian oscillations of clock genes," Journal of Theoretical Biology, Vol. 239, pp. 101-122, 2006
Kenji Morita, Kunichika Tsumoto, and Kazuyuki Aihara, "Bidirectional Modulation of Neuronal Responses by Depolarizing GABAergic Inputs," Biophysical Journal, Vol. 90, pp. 1925-1938, 2006
Gouhei Tanaka, Borja Ibarz, Miguel A.F. Sanjuán, and Kazuyuki Aihara, "Synchronization and Propagation of Bursts in Networks of Coupled Map Neurons," Chaos, Vol. 16, No. 1, 013113, 2006
Dorjsuren Battogtokh, Kazuyuki Aihara, and John J. Tyson, "Synchronization of Eukaryotic Cells by Periodic Forcing," Physical Review Letters, Vol. 96, No. 14, 148102-1--148102-4, 2006
Naoki Masuda, Goce Jakimoski, Kazuyuki Aihara and Ljupco Kocarev, "Chaotic block ciphers: from theory to practical algorithms," IEEE Transactions on Circuits and Systems-I, Vol. 53, No. 6, pp. 1341-1352, 2006
Taro Toyoizumi and Kazuyuki Aihara, "Generalization of the Mean-field Method for Power-law Distributions," International Journal of Bifurcation and Chaos, Vol. 16, No. 1, pp. 129-135, 2006
Hiromichi Suetani, Yukito Iba, and Kazuyuki Aihara, "Detecting Generalized Synchronization of Chaotic Dynamical Systems: A Kernel-based Method and Choice of Its Parameter," Progress of Theoretical Physics, Supplement No.161, pp.340-343 , 2006
Takashi Takemoto, Takashi Kohno, and Kazuyuki Aihara, "MOSFET Implementation of Class I* Neurons Coupled by Gap Junctions," Journal of Artificial Life and Robotics, Vol.10, No.1, pp.1-5 , 2006
Ruiqi Wang, Luonan Chen, and Kazuyuki Aihara, "Synchronizing a Multicellular System by External Input: An Artificial Control Strategy," Bioinformatics, Vol.22, No.14, pp.1775-1781 , 2006
Yoshito Hirata, Hideyuki Suzuki, and Kazuyuki Aihara, "Reconstructing State Spaces from Multivariate Data using Variable Delays," Physical Review E 74, 026202 , 2006
Hiromichi Suetani, Yukito Iba, and Kazuyuki Aihara, "Detecting Generalized Synchronization Between Chaotic Signals: A Kernel-based Approach," Journal of Physics A: Math. Gen. Vol.39, pp.10723-10742 , 2006
Chunguang Li, Luonan Chen, and Kazuyuki Aihara, "Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples," PLoS Computational Biology, Vol.2, No.8, pp.0925-0931 , 2006
Yoshihiro Morishita, Tetsuya J. Kobayashi, and Kazuyuki Aihara, "An Optimal Number of Molecules for Signal Amplification and Discrimination in a Chemical Cascade," Biophysical Journal, Vol.91, pp.2072-2081 , 2006
Taro Toyoizumi, Kazuyuki Aihara, and Shun-ichi Amari, "Fisher Information for Spike-based Population Decoding," Physical Review Letters, Vol.97, 098102 , 2006
Gen Kurosawa, Kazuyuki Aihara, and Yoh Iwasa, "A Model for the Circadian Rhythm of Cyanobacteria that Maintains Oscillation without Gene Expression," Biophysical Journal, Vol.91, pp.2015-2023 , 2006
Ruiqi Wang, Luonan Chen, and Kazuyuki Aihara, "Construction of Genetic Oscillators with Interlocked Feedback Networks," Journal of Theoretical Biology, Vol.242, pp.454-463 , 2006
Gen Kurosawa and Albert Goldbeter, "Amplitude of Circadian Oscillations Entrained by 24-h Light Dark Cycles," Journal of Theoretical Biology, Vol.242, pp.478-488 , 2006
Yuichi Katori, Naoki Masuda, and Kazuyuki Aihara, "Dynamic Switching of Neural Codes in Networks with Gap Junctions," Neural Networks, Vol.19, pp.1463-1466 , 2006
Ryosuke Hosaka, Tohru Ikeguchi, and Kazuyuki Aihara, "Self-organizing Rhythmic Patterns with Spatio-temporal spikes in Class I and Class II Neural Networks," Lecture Notes in Computer Science, Vol.4232, pp.39-48 , 2006
Chunguang Li, Luonan Chen, and Kazuyuki Aihara, "Stability of Genetic Networks with SUM Regulatory Logic: Lur'e System and LMI Approach," IEEE Trans. on Circuits and Systems-I: Regular Papers, Vol.53, No.11, pp.2451-2458 , 2006
Luonan Chen and Ruiqi Wang, "Designing Gene Regulatory Networks with Specified Functions," IEEE Trans. on Circuits and Systems-I: Regular Papers, Vol.53, No.11, pp. 2444-2450 , 2006
Hiroyasu Ando and Kazuyuki Aihara, "Adaptation to the Edge of Chaos in One-dimensional Chaotic Maps," Physical Review E, Vol.74, No.6, 066205 , 2006
Kazumichi Ohtsuka, Norio Konno, Naoki Masuda, and Kazuyuki Aihara, "Phase Diagrams and Correlation Inequalities of a Three-state Stochastic Epidemic Model on the Square Lattice," International Journal of Bifurcation and Chaos, Vol.16, No.12, pp.3687-3693 , 2006
Yoshiyuki Sato, Taro Toyoizumi, and Kazuyuki Aihara "Bayesian Inference Explains Perception of Unity and Ventriloquism Aftereffect: Identification of Common Sources of Audiovisual Stimuli," Neural Computation, Vol.19, No.12, pp.3335-3355, 2007
Guoguang He, Manish Dev Shrimali, and Kazuyuki Aihara "Partial State Feedback Control of Chaotic Neural Network and its Application," Physics Letters A, Vol.371, No.3, pp.228-233, 2007
Ikkyu Aihara, Shunsuke Horai, Hiroyuki Kitahata, Kazuyuki Aihara, and Kenichi Yoshikawa, "Dynamical calling behavior experimentally observed in Japanese tree frogs (Hyla japonica)," IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, Vol.E90-A, No.10, pp.2154-2161, 2007
Yoshito Hirata, Shunsuke Horai, Hideyuki Suzuki, and Kazuyuki Aihara "Testing Serial Dependence by Random-shuffle Surrogates and the Wayland Method," Physics Letters A, Vol.370, No.3-4, pp.265-274, 2007
Chunguang Li, Luonan Chen, Kazuyuki Aihara, "Stochastic Stability of Genetic Networks with Disturbance Attenuation," IEEE Transactions on Circuits and Systems II, Vol.54, No.10, pp.892-896, 2007
Manish Dev Shrimali, Sudeshna Sinha, and Kazuyuki Aihara, "Asynchronous Updating Induces Order in Threshold Coupled Systems," Physical Review E, Vol.76, 046212, 2007
Takashi Kohno and Kazuyuki Aihara, "Bottom-up Design of Class 2 Silicon Nerve Membrane," Journal of Intelligent & Fuzzy Systems, Vol.18, No.5, pp.465-475, 2007
Masashi Aono, Masahiko Hara, and Kazuyuki Aihara, "Amoeba-based Neurocomputing with Chaotic Dynamics," Communications of the ACM, Vol. 50, No. 9, pp.69-72, 2007
Kantaro Fujiwara, Hiroki Fujiwara, Minoru Tsukada, Kazuyuki Aihara, "Reproducing Bursting Interspike Interval Statistics of the Gustatory Cortex," Biosystems, Vol.90, No.2, pp.442-448, 2007
Kosuke Hamaguchi, Masato Okada, and Kazuyuki Aihara, "Variable Timescales of Repeated Spike Patterns in Synfire Chain with Mexican-Hat Connectivity," Neural Computation, Vol.19, No.9, pp.2468-2491, 2007
Zhijie Wang, Hong Fan, and Kazuyuki Aihara, "An Associative Network with Chaotic Neurons and Dynamic Synapse," International Journal of Bifurcation and Chaos, Vol.17, No.9, pp.3085-3097, 2007
Ruiqi Wang, Luonan Chen and Kazuyuki Aihara, "Detection of Cellular Rhythms and Global Stability within Interlocked Feedback Systems," Mathematical Biosciences, Vol.209, No.1, pp.171-189, 2007
Wendi Wang, Shinji Nakaoka, and Yasuhiro Takeuchi, "Invest Conflicts of Adult Predators," Journal of Theoretical Biology, Vol. 253, pp. 12-23, 2007
Naoki Masuda, Masato Okada, and Kazuyuki Aihara, "Filtering of Spatial Bias and Noise Inputs by Spatially Structured Neural Networks," Neural Computation, Vol.19, No.7, pp.1854-1870, 2007
Kenji Morita, Masato Okada, and Kazuyuki Aihara, "Selectivity and Stability via Dendritic Nonlinearity," Neural Computation, Vol.19, No.7, pp.1798-1853, 2007
Hideki Tanaka, Takashi Morie and Kazuyuki Aihara, "A CMOS circuit for STDP with a symmetric time window," International Congress Series, Vol.1301, pp.152-155, 2007
Takashi Shimada, Yosuke Murase, Satoshi Yukawa, Nobuyasu Ito and Kazuyuki Aihara, "A Simple Model of Evolving Ecosystems," Journal of Artificial Life and Robotics, Vol.11, No.2, pp.153-156, 2007
Nobuaki Sugimine and Kazuyuki Aihara, "Stability of an Equilibrium State in a Multiinfectious-type SIS Model on a Truncated Network," Journal of Artificial Life and Robotics, Vol.11, No.2, pp.157-161, 2007
Masatoshi Funabashi and Kazuyuki Aihara, "Modeling Birdsong Learning with a Chaotic Elman Network," Journal of Artificial Life and Robotics,Vol.11, No.2, pp.162-166, 2007
Kantaro Fujiwara and Kazuyuki Aihara, "Classification of the Spike Sequences by Distinguishing their Sources of Temporal Correlations," Journal of Artificial Life and Robotics, Vol.11, No.2, pp.167-170, 2007
Hiroyasu Ando, S. Boccaletti, and Kazuyuki Aihara, "Automatic Control and Tracking of Periodic Orbits in Chaotic Systems," Physical Review E, Vol.75, 066211-1-5, 2007
Naoki Masuda and Kazuyuki Aihara, "Dual Coding Hypotheses for Neural Information Representation," Mathematical Biosciences, Vol.207, pp.312-321, 2007
Shinji Nakaoka, and Yasuhiro Takeuchi, "Mathematical study on sharing metabolism," RIMS Kokyuroku Bessatsu, No.3, pp.123-130, 2007
Tsutomu Takeuchi, Takamichi Hinohara, Gen Kurosawa and Kenko Uchida, "A temperature-compensated model for circadian rhythms that can be entrained by temperature cycles," Journal of Theoretical Biology, Vol.246, No.1, pp.195-204, 2007
Borja Ibarz, Gouhei Tanaka, Miguel A.F. Sanjuan, and Kazuyuki Aihara, "Sensitivity versus Resonance in Two-dimensional Spiking-bursting Neuron Models," Physical Review E, Vol. 75, 041902 ,2007
Munehisa Sekikawa, Naohiko Inaba and Kazuyuki Aihara, "Coexisting Two Canards and their Breakdown into Chaos in the van der Pol Oscillator under Weak Periodic Perturbation," Physics Letters A, Vol.363, No.5-6, pp. 404-410, 2007
Gouhei Tanaka and Kazuyuki Aihara, "Collective Skipping: Aperiodic Phase Locking in Ensembles of Bursting Oscillators," Europhysics Letters, Vol.78, No.1, 10003, 2007
Shigeki Tsuji, Tetsushi Ueta, Hiroshi Kawakami, Hiroshi Fujii, and Kazuyuki Aihara, "Bifurcations in Two-dimensional Hindmarsh-Rose Type Model," International Journal of Bifurcation and Chaos, Vol.17, No.3, pp.985-998, 2007
Shigeki Tsuji, Tetsushi Ueta, and Hiroshi Kawakami, "Bifurcation Analysis of Current Coupled BVP Oscillators," International Journal of Bifurcation and Chaos, Vol.17, No.3, pp.837-850, 2007
Taro Toyoizumi, Jean-Pascal Pfister, Kazuyuki Aihara, and Wulfram Gerstner, "Optimality Model of Unsupervised Spike-Timing-Dependent Plasticity: Synaptic Memory and Weight Distribution," Neural Computation, Vol.19, No.3, pp.639-671, 2007
Chunguang Li, Luonan Chen, and Kazuyuki Aihara, "A Systems Biology Perspective on Signal Processing in Genetic Network Motifs," IEEE Signal Processing Magazine, Vol.24, No.2, pp.136-147, 2007
Yukio Sakisaka, Kei-ichi Tainaka, Nobuaki Sugimine, Jin Yoshimura, Taro Hayashi, Kazuyuki Aihara, Tatsuya Togashi, Tatsuo Miyazaki, "A Power Law for Extinction Process in Multiple Contact Process," Journal of the Physical Society of Japan, Vol.76, No.2, 023101-1-4, 2007
Takashi Takemoto, Takashi Kohno, and Kazuyuki Aihara, "Circuit Implementation and Dynamics of A Two-Dimensional MOSFET Neuron Model," International Journal of Bifurcation and Chaos, Vol.17, No.2, pp.459-508, 2007
Chunguang Li, Luonan Chen, and Kazuyuki Aihara, "Stochastic synchronization of genetic oscillator networks," BMC Systems Biology, Vol.1, 6, 2007
Aiko Miyamura Ideta, Gouhei Tanaka, Takumi Takeuchi, and Kazuyuki Aihara "A Mathematical Model of Intermittent Androgen Suppression for Prostate Cancer," Journal of Nonlinear Science, Vol.18, No.6, pp.593-641, 2008
Munehisa Sekikawa, Takashi Kohno, and Kazuyuki Aihara "An Integrated Circuit Design of a Silicon Neuron and its Measurement Results," Artificial Life and Robotics, Vol.13, No.1, pp.116-119, 2008
Makito Oku and Kazuyuki Aihara "Networked Reinforcement Learning," Artificial Life and Robotics, Vol.13, No.1, pp.112-115, 2008
Yoshito Hirata, Shunsuke Horai, and Kazuyuki Aihara "Reproduction of distance matrices and original time series from recurrence plots and their applications," European Physical Journal Special Topics, Vol.164, pp.13-22, 2008
Tatsuo Yanagita, Hiromichi Suetani, and Kazuyuki Aihara "Bifurcation Analysis of Solitary and Synchronized Pulses and Formation of Reentrant Waves in Laterally Coupled Excitable Fibers," Physical Review E, Vol.78, 056208-1-11, 2008
Hayato Takahashi "On a Definition of Random Sequences with Respect to Conditional Probability," Information and Computation, 206,2008),pp.1375-1382, 2008
Kazuhiro Sakamoto, Hajime Mushiake, Naohiro Saito, Kazuyuki Aihara, Masafumi Yano, and Jun Tanji "Discharge Synchrony during the Transition of Behavioral Goal Representations Encoded by Discharge Rates of Prefrontal Neurons," Cerebral Cortex, Vol.18, No.9, pp.2036-2045, 2008
Gouhei Tanaka, Kunichika Tsumoto, Shigeki Tsuji, and Kazuyuki Aihara "Bifurcation Analysis on a Hybrid Systems Model of Intermittent Hormonal Therapy for Prostate Cancer," Physica D, Vol.237, No.20, pp.2616-2627, 2008
Hiroyuki Okano, Tetsuya J. Kobayashi, Hirokazu Tozaki, Hidenori Kimura, "Estimation of the Source-by-source Effect of Autorepression on Genetic Noise," Biophysical Journal, Vol.95, No.3, pp.1063-1074, 2008
Hong Fan, Zhijie Wang, Takaaki Ohnishi, Hiroo Saito, and Kazuyuki Aihara "Multicommunity Weight-driven Bipartite Network Model," Physical Review E, Vol.78, 026103-1-7, 2008
Takashi Kanamaru and Kazuyuki Aihara "Stochastic Synchrony of Chaos in a Pulse-Coupled Neural Network with Both Chemical and Electrical Synapses Among Inhibitory Neurons," Neural Computation, Vol.20, No.8, pp.1951-1972, 2008
Hiromichi Suetani, Tatsuo Yanagita and Kazuyuki Aihara, "PULSE DYNAMICS IN COUPLED EXCITABLE FIBERS: SOLITON-LIKE COLLISION, PHASE LOCKING, AND RECOMBINATION," International Journal of Bifurcation and Chaos, Vol. 18, No. 8 pp.2289-2308, 2008
Guoguang He, Luonan Chen, and Kazuyuki Aihara, "Associative Memory With a Controlled Chaotic Neural Network," Neurocomputing, Vol.71, pp.2794-2805, 2008
Ruiqi Wang, Chunguang Li, Luonan Chen, and Kazuyuki Aihara, "Modeling and Analyzing Biological Oscillations in Molecular Networks," Proceedings of the IEEE, Vol.96, pp.1361-1385, 2008
Yoshihiko Horio and Kazuyuki Aihara "Analog Computation through High-dimensional Physical Chaotic Neuro-dynamics," Physica D, Vol.237, No.9, pp.1215-1225, 2008
Yoshito Hirata, Yuichi Katori, Hidetoshi Shimokawa, Hideyuki Suzuki, Timothy A. Brenkinsop, Eric J. Lang, and Kazuyuki Aihara "Testing a Neural Coding Hypothesis using Surrogate Data," Journal of Neuroscience Methods, Vol.172, pp.312-322, 2008
Bing Wang, Kazuyuki Aihara, and Luonan Chen, "Jamming in Weighted Scale-free Gradient Networks," Europhysics Letters, Vol.83, pp.28006, 2008
Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara "Protein domain annotation with integration of heterogeneous information sources," Proteins: Structure, Function, and Bioinformatics, Vol.72, No.1, pp.461-473, 2008
Shinji Nakaoka, and Yasuhiro Takeuchi "Two types of coexistence in cross-feeding microbial consortia," AIP Proceedings, Vol. 1028, pp. 233-260 ,2008-7
Ikkyu Aihara and Kunichika Tsumoto "Nonlinear Dynamics and Bifurcations of a Coupled Oscillator Model for Calling Behavior of Japanese Tree Frogs (Hyla Japonica)," Mathematical Biosciences, Vol.214, No.1/2, pp.6-10, 2008
Takashi Shimada and Kazuyuki Aihara "A Nonlinear Model with Competition between Prostate Tumor Cells and its Application to Intermittent Androgen Suppression Therapy of Prostate Cancer," Mathematical Biosciences, Vol.214, No.1/2, pp.134-139, 2008
Takahisa Ogino,Yoshihiko Horio and Kazuyuki Aihara "Analysis of Chaotic Neural Network through Mutual Information in Solving Quadratic Assignment Problems," Journal of Signal Processing, Vol.12, No.4, pp.291-294, 2008
Masahiro Kawasaki, Masataka Watanabe, Jiro Okuda, Masamichi Sakagami, and Kazuyuki Aihara "Human Posterior Parietal Cortex Maintains Color, Shape and Motion in Visual Short-term Memory," Brain Research, Vol.1213, pp.91-97, 2008
Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara "Protein Domain Annotation with Predicted Domain-Domain Interaction Networks," Protein and Peptide Letters, Vol.15, No.5, pp.456-462, 2008
Chunguang Li, Luonan Chen, and Kazuyuki Aihara "Impulsive Control of Stochastic Systems with Applications in Chaos Control, Chaos Synchronization, and Neural Networks," Chaos, Vol.18, No.2, 023132, 2008
Manish Dev Shrimali, Sudeshna Sinha, and Kazuyuki Aihara "Asynchronous Updating of Threshold-coupled Chaotic Neurons," Pramana-Journal of Physics, Vol.70, No.6, pp.1127-1134, 2008
Hiroyasu Ando, Sudeshna Sinha, and Kazuyuki Aihara "Emergent Organization of Oscillator Clusters in Coupled Self-regulatory Chaotic Maps," Pramana-Journal of Physics, Vol.70, No.6, pp.1153-1164, 2008
Nobuaki Sugimine, Naoki Masuda, Norio Konno, and Kazuyuki Aihara "On Global and Local Critical Points of Extended Contact Process on Homogeneous Trees," Mathematical Bioscience, Vol.213, No.1, pp.13-17, 2008
Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, and Kazuyuki Aihara "Uncovering Signal Transduction Networks from High-throughput Data by Integer Linear Programming," Nucleic Acids Research, Vol.36, No.9, e48, 2008
Munehisa Sekikawa, Naohiko Inaba, Takashi Tsubouchi, and Kazuyuki Aihara "Analysis of Torus Breakdown into Chaos in a Constraint Duffing van der Pol Oscillator," International Journal of Bifurcation and Chaos, Vol.18, No.4, pp.1051-1068, 2008
Hirokazu Tozaki, Tetsuya J. Kobayashi, Hiroyuki Okano, Ryo Yamamoto, Kazuyuki Aihara, and Hidenori Kimura "Reconstructing the Single-cell-level Behavior of a Toggle Switch from Population-level Measurements," FEBS Letter, Vol.582, No.7, pp.1067-1072, 2008
Shingo Iwami, Shinji Nakaoka, and Yasuhiro Takeuchi "Mathematical Analysis of HIV Model with Frequency Dependence and Viral Diversity," Mathematical Biosciences and Engineering, Vol. 5, No. 3, pp. 457-476, 2008
Makito Oku and Kazuyuki Aihara "A Mathematical Model of Planning in the Prefrontal Cortex," Artificial Life and Robotics, Vol.12, No.1-2, pp.227-231, 2008
Takashi Kohno and Kazuyuki Aihara "Mathematical-model-based Design of Silicon Burst Neurons," Neurocomputing, Vol.71, No.7-9, pp.1619-1628, 2008
Xing-Ming Zhao, Xin Li, Luonan Chen, Kazuyuki Aihara "Protein Classification with Imbalanced Data," Proteins: Structure, Function, and Bioinformatics, Vol.70, No.4, pp.1125-1132, 2008
Guoguang He, Manish Dev Shrimali and Kazuyuki Aihara "Threshold Activated Control of Chaotic Neural Network," Neural Networks, Vol.21, pp.114-121, 2008
Yoshito Hirata, Danilo P. Mandic, Hideyuki Suzuki, and Kazuyuki Aihara "Wind Direction Modelling using Multiple Observation Points," Philosophical Transactions of the Royal Society A, Vol.366, No.1865, pp. 591-607, 2008
Kenji Morita, Rita Kalra, Kazuyuki Aihara, and Hugh P.C. Robinson "Recurrent Synaptic Input and the Timing of Gamma-frequency-modulated Firing of Pyramidal Cells During Neocortical "UP" States," Journal of Neuroscience, Vol.28, pp.1871-1881, 2008
Xing-Ming Zhao, Yong Wang, Luonan Chen, and Kazuyuki Aihara "Gene Function Prediction using Labeled and Unlabeled Data," BMC Bioinformatics, Vol.9, No.57, 2008
Xing-Ming Zhao, Luonan Chen, and Kazuyuki Aihara "Protein Function Prediction with the Shortest Path in Functional Linkage Graph and Boosting," International Journal of Bioinformatics Research and Applications, Vol.4, pp.375-384, 2008